codenameTounimod: Conversion from modification codename to UniMod ID

In Roestlab/mstools: OpenSWATH Mass Spectrometry Data Exploration

Description

Conversion from modification codename to UniMod ID

Usage

codenameTounimod( mod_seq, out='sequence' )

Arguments

mod_seq	A character vector containing of a peptide sequence, containing modification code names to be converted to UniMod IDs
out	A character vector. Default: 'sequence' will return mod_seq with covnerted codename to unimod. Otherwise, will return converted unimod

Value

A character vector. Returned mod_seq with converted unimod or returned unimod

Examples

mod_seq <- "EGHAQNPM(Oxidation)EPS(Phospho)VPQLS(Phospho)LM(Oxidation)DVK"
## Will return peptide sequence with UniMod ID
codenameTounimod ( mod_seq )
## Out
## [1] "EGHAQNPM(UniMod:35)EPS(UniMod:21)VPQLS(UniMod:21)LM(UniMod:35)DVK"

Roestlab/mstools documentation built on Feb. 7, 2020, 3:57 p.m.