coverageByTranscriptW | R Documentation |
Extends the function with weights,
see coverageByTranscript
for original function.
coverageByTranscriptW(
x,
transcripts,
ignore.strand = FALSE,
weight = 1L,
seqinfo.x.is.correct = FALSE
)
x |
reads ( |
transcripts |
|
ignore.strand |
a logical (default: FALSE) |
weight |
a vector (default: 1L), if single number applies for all, else it must be the string name of a defined meta column in "x", that gives number of times a read was found. GRanges("chr1", 1, "+", score = 5), would mean score column tells that this alignment was found 5 times. |
seqinfo.x.is.correct |
logical, default FALSE. If you know x, has correct seqinfo, then you can save some computation time by setting this to TRUE. |
Integer Rle of coverage, 1 per transcript
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