importGtfFromTxdb: Import the GTF / GFF that made the txdb

importGtfFromTxdbR Documentation

Import the GTF / GFF that made the txdb

Description

Import the GTF / GFF that made the txdb

Usage

importGtfFromTxdb(txdb, stop.error = TRUE)

Arguments

txdb

a TxDb, path to txdb / gff or ORFik experiment object

stop.error

logical TRUE, stop if Txdb does not have a gtf. If FALSE, return NULL.

Value

data.frame, the gtf/gff object imported with rtracklayer::import. Or NULL, if stop.error is FALSE, and no GTF file found.


Roleren/ORFik documentation built on Nov. 13, 2024, 10 p.m.