loadTxdb | R Documentation |
Useful to allow fast TxDb loader like .db
loadTxdb(txdb, chrStyle = NULL, organism = NA, chrominfo = NULL)
txdb |
a TxDb file, a path to one of: (.gtf ,.gff, .gff2, .gff2, .db or .sqlite) or an ORFik experiment |
chrStyle |
a GRanges object, TxDb, FaFile,
, a |
organism |
character, default NA. Scientific name of organism. Only used if input is path to gff. |
chrominfo |
Seqinfo object, default NULL. Only used if input is path to gff. |
a TxDb object
library(GenomicFeatures)
# Get the gtf txdb file
txdbFile <- system.file("extdata", "hg19_knownGene_sample.sqlite",
package = "GenomicFeatures")
txdb <- loadTxdb(txdbFile)
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