mainNames: Get main name from variant name

In Roleren/ORFik: Open Reading Frames in Genomics

Get main name from variant name

Description

Used to standardize nomeclature for experiments.
Example: RFP is main naming, but a variant is ribo-seq ribo-seq will then be renamed to RFP

Usage

mainNames(names, dt)

Arguments

names	a character vector of names that must exist in dt$allNames
dt	a data.table with 2 columns (mainName, allNames)

Value

a data.table with 2 columns, the main name, and all name variants of the main name in second column as a list.

See Also

Other experiment_naming: batchNames(), cellLineNames(), cellTypeNames(), conditionNames(), fractionNames(), inhibitorNames(), libNames(), repNames(), stageNames(), tissueNames()

Roleren/ORFik documentation built on Nov. 13, 2024, 10 p.m.