restrictTSSByUpstreamLeader: Restrict extension of 5' UTRs to closest upstream leader end
In Roleren/ORFik: Open Reading Frames in Genomics
View source: R/cage_annotations.R
restrictTSSByUpstreamLeader R Documentation
Restrict extension of 5' UTRs to closest upstream leader end
Description
Basicly this function restricts all startSites, to the upstream GRangesList
objects end. Usually leaders, for CAGE.
Example: leader1: start on 10, leader2: stop on 8,
extend leader1 to 5 -> this function will resize leader1
to 9, to be outside leader2, so that CAGE reads can not wrongly overlap.
Usage
restrictTSSByUpstreamLeader(fiveUTRs, shiftedfiveUTRs)
Arguments
fiveUTRs
The 5' leader sequences as GRangesList
shiftedfiveUTRs
The 5' leader sequences as GRangesList
shifted by CAGE
Value
GRangesList object of restricted fiveUTRs
Roleren/ORFik documentation built on Dec. 18, 2024, 11:39 p.m.
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View source: R/cage_annotations.R
| restrictTSSByUpstreamLeader | R Documentation |
Restrict extension of 5' UTRs to closest upstream leader end
Description
Basicly this function restricts all startSites, to the upstream GRangesList objects end. Usually leaders, for CAGE. Example: leader1: start on 10, leader2: stop on 8, extend leader1 to 5 -> this function will resize leader1 to 9, to be outside leader2, so that CAGE reads can not wrongly overlap.
Usage
restrictTSSByUpstreamLeader(fiveUTRs, shiftedfiveUTRs)
Arguments
fiveUTRs |
The 5' leader sequences as GRangesList |
shiftedfiveUTRs |
The 5' leader sequences as GRangesList shifted by CAGE |
Value
GRangesList object of restricted fiveUTRs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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