seqnamesPerGroup | R Documentation |
Get list of seqnames per granges group
seqnamesPerGroup(grl, keep.names = TRUE)
grl |
a |
keep.names |
a boolean, keep names or not, default: (TRUE) |
a character vector or Rle of seqnames(if seqnames == T)
gr_plus <- GRanges(seqnames = c("chr1", "chr1"),
ranges = IRanges(c(7, 14), width = 3),
strand = c("+", "+"))
gr_minus <- GRanges(seqnames = c("chr2", "chr2"),
ranges = IRanges(c(4, 1), c(9, 3)),
strand = c("-", "-"))
grl <- GRangesList(tx1 = gr_plus, tx2 = gr_minus)
seqnamesPerGroup(grl)
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