trimming.table: Create trimming table

In Roleren/ORFik: Open Reading Frames in Genomics

Create trimming table

Description

From fastp runs in ORFik alignment process

Usage

trimming.table(trim_folder)

Arguments

trim_folder

folder of trimmed files, only reads fastp .json files

Value

a data.table with 6 columns, raw_library (names of library), raw_reads (numeric, number of raw reads), trim_reads (numeric, number of trimmed reads), raw_mean_length (numeric, raw mean read length), trim_mean_length (numeric, trim mean read length).

Examples

# Location of fastp trimmed .json files
trimmed_folder <- "path/to/libraries/trim/"
#trimming.table(trimmed_folder)

Roleren/ORFik documentation built on April 25, 2024, 8:41 p.m.