center_of_mass | Find Center of Mass in images |
clumps | Find 3D aggregates/clumps |
clumps_dist | Find distances between 3D aggregates/clumps |
clumps_plot | Plot 3D aggregates |
co_agg | 3D co-aggregation |
create_nulls | Create RDS for all empty pixels |
create_random | Create random image |
cross_ratio | 3D cross-ratio |
extract_layers | Extract layers |
findIMG | Find arrays created with 'loadIMG' or 'tiff_to_array' |
layer_split | Split quantification in Top, Middle and Bottom |
layer_stand | Trim and standardize quantification |
loadIMG | Load .tif images into R |
merge_channels | Create RDS for a combination of channels |
morphIMG | Apply mathematical morphology kernel on image and save as RDS |
occupancy | 3D Occupancy |
quant | Quantifies the pixels in images |
smoothIMG | Median smooth image and save as RDS |
threshIMG | Apply thresholding on image and save as RDS |
tiff_to_array | Make Array from .tif file(s) |
xy_splits | Analyses for each xy position |
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