merge_channels: Create RDS for a combination of channels

In Russel88/RCon3D: Analysis of Confocal Images of Microbial Biofilms

Create RDS for a combination of channels

Description

Create RDS for a combination of channels

Usage

merge_channels(path, imgs, channels, method)

Arguments

path	The path of where to create the _Array.R files
imgs	The paths for the images to merge
channels	Character vector with names of the channels. Channel names should be in the names of the .tif files
method	How to merge. Either "union" (presence is coded if at least one channel is present), "intersect" (presence is coded only if all channels are present), or "subtract" (presence is coded as those in the first channel but not in the second channel).

Value

Creates arrays as RDS files in the specified path, and outputs the paths for image files containing the name of the method and channels

Russel88/RCon3D documentation built on Dec. 14, 2022, 11:06 p.m.