clumps_dist: Find distances between 3D aggregates/clumps

In Russel88/RCon3D: Analysis of Confocal Images of Microbial Biofilms

Find distances between 3D aggregates/clumps

Description

With two outputs from the clumps function compute the distances between pairs of aggregates. Computes the distances between aggregates in clumps.x with those in clumps.y. If you want distances between aggregates from one output, just input the data.frame in clumps.x. Provide pwidth and zstep to get the distance in microns. Alternatively it's the pixel distance

Usage

clumps_dist(clumps.x, clumps.y = clumps.x, pwidth = 1, zstep = 1, cores = 1)

Arguments

clumps.x	Data.frame output from the clumps function (...$Aggregates)
clumps.y	Optional. Data.frame output from the clumps function (...$Aggregates)
pwidth	Width of pixels in microns
zstep	z-step in microns
cores	Number of cores to use for parallel computing

Value

A dataframe with the distances

Russel88/RCon3D documentation built on Dec. 14, 2022, 11:06 p.m.