smoothIMG: Median smooth image and save as RDS
In Russel88/RCon3D: Analysis of Confocal Images of Microbial Biofilms
smoothIMG R Documentation
Median smooth image and save as RDS
Description
Smooth images as a preparation for subsequent analyses
Usage
smoothIMG(imgs, kern.smooth = c(3, 3, 3), type.smooth = "box", cores = 1)
Arguments
imgs
The paths of array files; i.e. output from loadIMG or findIMG functions.
kern.smooth
Numeric vector indicating range of median smoothing in the x,y,z directions. Has to be odd integers.
type.smooth
Type of kernel for smooth "box" includes diagonals, "diamond" is without diagonals
cores
Integer. Number of cores to use for parallel computing.
Value
Creates arrays as RDS files and outputs the paths for these files
Russel88/RCon3D documentation built on Dec. 14, 2022, 11:06 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| smoothIMG | R Documentation |
Median smooth image and save as RDS
Description
Smooth images as a preparation for subsequent analyses
Usage
smoothIMG(imgs, kern.smooth = c(3, 3, 3), type.smooth = "box", cores = 1)
Arguments
imgs |
The paths of array files; i.e. output from |
kern.smooth |
Numeric vector indicating range of median smoothing in the x,y,z directions. Has to be odd integers. |
type.smooth |
Type of kernel for smooth "box" includes diagonals, "diamond" is without diagonals |
cores |
Integer. Number of cores to use for parallel computing. |
Value
Creates arrays as RDS files and outputs the paths for these files
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.