morphIMG: Apply mathematical morphology kernel on image and save as RDS

In Russel88/RCon3D: Analysis of Confocal Images of Microbial Biofilms

Apply mathematical morphology kernel on image and save as RDS

Description

Morph images as a preparation for subsequent analyses

Usage

morphIMG(imgs, morph = NULL, kern = c(3, 3, 3), type = "box", cores = 1)

Arguments

imgs	The paths of array files; i.e. output from loadIMG or findIMG functions.
morph	One of "erode", "dilate", "opening", or "closing"
kern	Numeric vector indicating range of morpinh in the x,y,z directions. Has to be odd integers.
type	Type of kernel for morphing "box" includes diagonals, "diamond" is without diagonals
cores	Integer. Number of cores to use for parallel computing.

Value

Creates arrays as RDS files and outputs the paths for these files

Russel88/RCon3D documentation built on Dec. 14, 2022, 11:06 p.m.