Average_simulations.f | Average of the dynamic trajectory of the network. |
AVG_cellcycle | The dynamics of mammalian cell cycle network |
BN | Toy Boolean model |
BN_Cardiacnetwork | A Boolean Model of the Cardiac Gene Regulatory. |
BN_cellcycle | Mammalian cell cycle network |
Connect2Rtools | Connect to Rtools |
Create_heatmap | Create a heatmap |
dynamic_evolution.f | Dynamic Evolution of the network |
export2SBMLqual | Export a network to SBML qual format. |
Get_all_attractors.f | Get attractors of a Boolean model |
Get_attractor.f | Get the attractor given an initial condition. |
Get_Attractor_parallel.f | Get the attractor given an initial condition. |
KO_matrix.f | Perturbation analysis: knockouts |
Matrix_parametrization.f | Change matrix values for heatmap creation |
OE_AA_matrix.f | Perturbation analysis: Overexpressions after first activation |
OE_matrix.f | Perturbation analysis: Overexpressions |
read.Boolean.functions | Read Boolean functions of the network |
read.cellcollective | Load a Boolean network from The Cell Collective repository |
SPIDDOR-package | SPIDDOR |
toggplot | Change to ggplot format |
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