BN_cellcycle: Mammalian cell cycle network

In SPIDDOR/SPIDDOR: SPIDDOR

Description

The mammalian cell cycle network as described by Faure et al.

Usage

data(cellcycle)

Details

The data consists of a list named BN_cellcycle with 10 nodes describing the four phases of the mammalian cell cycle. The network has one steady-state attractor, and a cycle with 7 states if the user selects the synchronous attractor search or a complex attractor if the asynchronous updating method is prefered. The components of the BN_cellcycle list are described in more detail in read.Boolean.functions. Additionally, the Boolean functions of the network appear as a argument of this list, in order to read them with read.Boolean.functions instead of using a text file.

Source

A. Faure, A. Naldi, C. Chaouiya and D. Thieffry (2006), Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle. Bioinformatics 22(14):e124–e131.

Examples

data(cellcycle)

# the network is stored in a variable called 'BN_cellcycle'
print(BN_cellcycle)

SPIDDOR/SPIDDOR documentation built on May 9, 2019, 11:42 a.m.