read.Boolean.functions: Read Boolean functions of the network

In SPIDDOR/SPIDDOR: SPIDDOR

Description

The read.Boolean.functions function loads the Boolean equations saved in a text file and creates the corresponding simulation algorithm.

Usage

read.Boolean.functions(file = NULL, Lines = NULL, language = "C")

Arguments

file	The name of the file to be read
Lines	If a file name is not specified, the name of the Robject where the Boolean expressions has been saved.
language	The name of the programming language ("R" or "C") where the simulation algorithm will be coded. Defaults is C++ language.

Value

A list representing the most important information of the network is returned. It has the following components:

nodes.names	A vector of the node names of the network
Initial_conditions	A vector with the name of the nodes that will start in ON state in the first iteration of the simulation algorithm.
Modulator	The duration of the modulation interactions that take place in the network dynamics. It could have specific arguments for each Boolean expression where a modulation occurs, or it can have a general argument "modulation_dur" where the user can specify a general time duration for all the modulation of the network.
Arguments	A list with other arguments needed for a correct simulation of the network. Here, we included the duration of the threshold operators (THR).
Polymorphism	A vector specifying the activity level of each node in the network. Default values are 1 for each node, meaning a 100% activity for all the components of the network.

Examples

## Not run: 
data("Example_network")
BN<-read.Boolean.functions(Lines=BN$BooleanFunctions)

## End(Not run)

SPIDDOR/SPIDDOR documentation built on May 9, 2019, 11:42 a.m.