tests/testthat/_snaps/getters.md

In SWittouck/tidyamplicons: Functions to Manipulate and Visualize Amplicon Abundance Data

Correct numbers reported

Code
  ta_test %>% report_numbers()
Message
  samples: 217
  taxa: 1957
  reads: 3873478

Code
  ta_test %>% numbers()
Output
  n_samples    n_taxa   n_reads 
        217      1957   3873478

Perform adonis shows stable output

Code
  adn
Output
  Permutation test for adonis under reduced model
  Terms added sequentially (first to last)
  Permutation: free
  Number of permutations: 999

  adonis2(formula = as.formula(paste("abundances_matrix", formula_RHS, sep = " ~ ")), data = metadata, permutations = permutations)
            Df SumOfSqs      R2      F Pr(>F)    
  location   1    2.800 0.03823 8.4267  0.001 ***
  method     1    0.334 0.00456 1.0056  0.409    
  Residual 211   70.118 0.95721                  
  Total    213   73.253 1.00000                  
  ---
  Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

SWittouck/tidyamplicons documentation built on Aug. 15, 2023, 3:14 a.m.