R/tidyamplicons.R

In SWittouck/tidyamplicons: Functions to Manipulate and Visualize Amplicon Abundance Data

#' tidyamplicons: Functions to manipulate and visualize amplicon count data.
#'
#' Tidyamplicons is an R package for the analysis of amplicon count data:
#' abundances of amplicon sequences (either clustered in OTUs or exact variants)
#' in samples. The package builds on the tidyverse created by Hadley Wickham:
#' the data are stored in tidy tables where each row is an observation and each
#' column a variable. In addition, the package supplies a set of "verbs":
#' functions that take a tidyamplicons object as first argument and also return
#' a tidyamplicons object. Not all functionality is currently implemented in the
#' form of verbs, but this will soon be remediated.
#'
#' @docType package
#' @name tidyamplicons
#'
#' @section Author(s):
#' Stijn Wittouck \email{wittouck_stijn@@hotmail.com}
#'
#' @import ggplot2
#' @import tidyr
#' @import dplyr
#' @import stringr
#' @import vegan
#' @importFrom tibble tibble
#' @importFrom plotly plot_ly layout
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