add_gcd: Add gene content distance
In SWittouck/tidyorthogroups: A Grammar of Genome Data Manipulation
add_gcd R Documentation
Add gene content distance
Description
This function adds a variable gcd (gene content distance) to the pair table.
As the name suggests, these are distances between genomes based on shared
gene content. Various types of distances can be computed; the function uses
the vegan package for this.
Usage
add_gcd(tg, method, binary)
Arguments
tg
A tidygenomes object
method
See vegan::vegdist()
binary
See vegan::vegdist()
Value
A tidygenomes object
SWittouck/tidyorthogroups documentation built on Feb. 2, 2023, 12:45 a.m.
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| add_gcd | R Documentation |
Add gene content distance
Description
This function adds a variable gcd (gene content distance) to the pair table. As the name suggests, these are distances between genomes based on shared gene content. Various types of distances can be computed; the function uses the vegan package for this.
Usage
add_gcd(tg, method, binary)
Arguments
tg |
A tidygenomes object |
method |
See |
binary |
See |
Value
A tidygenomes object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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