prepare_tidygenomes: Prepare tidygenomes object
In SWittouck/tidyorthogroups: A Grammar of Genome Data Manipulation
prepare_tidygenomes R Documentation
Prepare tidygenomes object
Description
This function prepares a tidygenomes object from a genome table, a
phylogenetic tree and a root location in the tree.
Usage
prepare_tidygenomes(
genomes,
pangenome = NULL,
tree = NULL,
phylogroups = NULL,
root = NULL,
genome_identifier = genome
)
Arguments
genomes
A genome table with a column genome
tree
An object of class phylo with tips corresponding to genomes
root
Three tips that identify the root (see root_tree.phylo)
Value
A tidygenomes object
SWittouck/tidyorthogroups documentation built on Feb. 2, 2023, 12:45 a.m.
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| prepare_tidygenomes | R Documentation |
Prepare tidygenomes object
Description
This function prepares a tidygenomes object from a genome table, a phylogenetic tree and a root location in the tree.
Usage
prepare_tidygenomes( genomes, pangenome = NULL, tree = NULL, phylogroups = NULL, root = NULL, genome_identifier = genome )
Arguments
genomes |
A genome table with a column |
tree |
An object of class phylo with tips corresponding to genomes |
root |
Three tips that identify the root (see root_tree.phylo) |
Value
A tidygenomes object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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