prepare_tidygenomes | R Documentation |
This function prepares a tidygenomes object from a genome table, a phylogenetic tree and a root location in the tree.
prepare_tidygenomes(
genomes,
pangenome = NULL,
tree = NULL,
phylogroups = NULL,
root = NULL,
genome_identifier = genome
)
genomes |
A genome table with a column |
tree |
An object of class phylo with tips corresponding to genomes |
root |
Three tips that identify the root (see root_tree.phylo) |
A tidygenomes object
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