pangenome_matrix: Return a pangenome matrix

View source: R/getters.R

pangenome_matrixR Documentation

Return a pangenome matrix

Description

This function returns the orthogroup content of the genomes in the form of a matrix where the rows represent genomes, the columns represent orthogroups and the cells contain the copy number or presence status of the orthogroups in the genomes.

Usage

pangenome_matrix(tg)

Arguments

tg

A tidygenomes object

Value

A matrix with the pangenome


SWittouck/tidyorthogroups documentation built on Feb. 2, 2023, 12:45 a.m.