read_phylip_distmat: Read a phylip formatted distance matrix
In SWittouck/tidyorthogroups: A Grammar of Genome Data Manipulation
read_phylip_distmat R Documentation
Read a phylip formatted distance matrix
Description
This function reads a phylip formatted distance matrix, as generated by e.g.
the EMBOSS tool distmat.
Usage
read_phylip_distmat(path, skip = 8, include_diagonal = T)
Arguments
path
Path to a phylip formatted distance matrix file
skip
Number of lines before the actual distance values start
include_diagonal
Should the diagonal of the distance matrix be included?
Details
The number of lines to skip can be different for different phylip distance
matrix files.
For each row, the value of sequence_1 will be before the value of sequence_2
in sorting order.
Value
A tibble with the variables sequence_1, sequence_2 and distance
SWittouck/tidyorthogroups documentation built on June 1, 2024, 10:49 p.m.
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| read_phylip_distmat | R Documentation |
Read a phylip formatted distance matrix
Description
This function reads a phylip formatted distance matrix, as generated by e.g. the EMBOSS tool distmat.
Usage
read_phylip_distmat(path, skip = 8, include_diagonal = T)
Arguments
path |
Path to a phylip formatted distance matrix file |
skip |
Number of lines before the actual distance values start |
include_diagonal |
Should the diagonal of the distance matrix be included? |
Details
The number of lines to skip can be different for different phylip distance matrix files.
For each row, the value of sequence_1 will be before the value of sequence_2 in sorting order.
Value
A tibble with the variables sequence_1, sequence_2 and distance
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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