test_that("correct class sce", {
pbmc_small <- mockSCE()
pbmc_small <- logNormCounts(pbmc_small)
pbmc_small <- runPCA(pbmc_small)
protein <- matrix(rnorm(10 * ncol(pbmc_small)), ncol = ncol(pbmc_small))
rownames(protein) <- paste0("A", seq(1, 10, 1))
colnames(protein) <- colnames(pbmc_small)
alt_adt <- SummarizedExperiment(assays = list(counts = protein))
altExp(pbmc_small, "ADT") <- alt_adt
pbmc_small <- make_hexbin(pbmc_small, 10, dimension_reduction = "PCA")
expect_equal(class(plot_hexbin_interact(pbmc_small,
type = c("counts", "counts"), mod = c("RNA", "ADT"),
feature = c("Gene_0001", "A1"),
interact = "mi"
))[2], "ggplot")
})
test_that("correct class fc sce", {
pbmc_small <- mockSCE()
pbmc_small <- logNormCounts(pbmc_small)
pbmc_small <- runPCA(pbmc_small)
pbmc_small <- make_hexbin(pbmc_small, 10, dimension_reduction = "PCA")
expect_equal(class(plot_hexbin_interact(pbmc_small,
type = c("counts", "counts"), mod = c("RNA", "RNA"),
feature = c("Gene_0001", "Gene_0002"), interact = "fc"
))[2], "ggplot")
})
test_that("error feature not found sce", {
pbmc_small <- mockSCE()
pbmc_small <- logNormCounts(pbmc_small)
pbmc_small <- runPCA(pbmc_small)
protein <- matrix(rnorm(10 * ncol(pbmc_small)), ncol = ncol(pbmc_small))
rownames(protein) <- paste0("A", seq(1, 10, 1))
colnames(protein) <- colnames(pbmc_small)
alt_adt <- SummarizedExperiment(assays = list(counts = protein))
altExp(pbmc_small, "ADT") <- alt_adt
pbmc_small <- make_hexbin(pbmc_small, 10, dimension_reduction = "PCA")
expect_error(plot_hexbin_interact(pbmc_small,
type = c("counts", "counts"),
mod = c("RNA", "ADT"), feature = c("Gene_001", "A1"), interact = "mi"
))
})
test_that("error assay not found sce", {
pbmc_small <- mockSCE()
pbmc_small <- logNormCounts(pbmc_small)
pbmc_small <- runPCA(pbmc_small)
protein <- matrix(rnorm(10 * ncol(pbmc_small)), ncol = ncol(pbmc_small))
rownames(protein) <- paste0("A", seq(1, 10, 1))
colnames(protein) <- colnames(pbmc_small)
alt_adt <- SummarizedExperiment(assays = list(counts = protein))
altExp(pbmc_small, "ADT") <- alt_adt
pbmc_small <- make_hexbin(pbmc_small, 10, dimension_reduction = "PCA")
expect_error(plot_hexbin_interact(pbmc_small,
type = c("counts", "counts"),
mod = c("RNA", "ADA"), feature = c("CD7", "A1"), interact = "mi"
))
})
test_that("error no hexbin sce", {
pbmc_small <- mockSCE()
pbmc_small <- logNormCounts(pbmc_small)
pbmc_small <- runPCA(pbmc_small)
protein <- matrix(rnorm(10 * ncol(pbmc_small)), ncol = ncol(pbmc_small))
rownames(protein) <- paste0("A", seq(1, 10, 1))
colnames(protein) <- colnames(pbmc_small)
alt_adt <- SummarizedExperiment(assays = list(counts = protein))
altExp(pbmc_small, "ADT") <- alt_adt
expect_error(plot_hexbin_interact(pbmc_small,
type = c("counts", "counts"),
mod = c("RNA", "ADT"), feature = c("CD7", "A1"), interact = "mi"
))
})
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