XmlNCleaning: XmlNCleaning

In Sautie/MALDITOFSpectraPA: Processing and analysis of MALDI_TOF spectra

Description

copies all mzXML files with at least n lines to a new folder or delete those with less than n lines, (the mzXML files have 26 lines) this way incomplete or truncated files are removed...the number of characters of line n=18 is also verified

Usage

XmlNCleaning(Dirp, newdir, op = "delete", n = 18, pl = 440518)

Arguments

Dirp:	folder containing the Maldi_Tof spectrum files,
newdir:	folder where the chosen files are copied,
op:	"delete"(default value) or "copy",
n:	number of lines (n=18, default value),
number:	n of characters of line 8 (440518, default value)

Examples

 XmlNCleaning("newdata")  XmlNCleaning("newdata5", "newdata", op="copy"),XXmlNCleaning("newdata5", "newdata", op="copy", n=26)
           its recommended to run this function with op="delete" after RenameXml,thus cleaning the output directory of the latter function

Sautie/MALDITOFSpectraPA documentation built on Dec. 31, 2020, 4:28 p.m.