API for SciDoPhenIA/phenomis
Analysis of single and multiple phenomic data sets

Global functions
.allDigits	Source code
.annot_chebi	Source code
.annot_kegg	Source code
.annot_local.ms	Source code
.annot_param_check	Source code
.annot_param_default	Source code
.annotating	Source code
.anovas	Source code
.anovas2ways	Source code
.anovas2waysDiffPval	Source code
.anovas2waysNames	Source code
.anovas2waysPlot	Source code
.anovasDiffPval	Source code
.anovasNames	Source code
.anovasPlot	Source code
.barplot_dims	Source code
.batch_correct	Source code
.checkRformat	Source code
.checkW4Mformat	Source code
.clustering	Source code
.cor	Source code
.correcting	Source code
.filtering	Source code
.gg_barplot	Source code
.identi_check	Source code
.inspecting	Source code
.loess	Source code
.loess_pred	Source code
.mzdiff_db	Source code
.na_zerovar	Source code
.normalizing	Source code
.oneFactorCheck	Source code
.palette	Source code
.pca_metrics	Source code
.plotMetrics	Source code
.plot_color_scale	Source code
.plot_drift	Source code
.plot_drift_pca	Source code
.plot_image	Source code
.plot_pca_metrics	Source code
.plot_pretty_axis	Source code
.reading	Source code
.reducing	Source code
.sampfeat_nas_zerovar	Source code
.sample_color	Source code
.sample_metrics	Source code
.sample_palette	Source code
.serrf_pred	Source code
.signifPrint	Source code
.transforming	Source code
.twoFactorsCheck	Source code
.twoSampCorNames	Source code
.twoSampCorPlot	Source code
.twoSampCorPval	Source code
.twoSampCorStat	Source code
.twoSampCorTests	Source code
.twoSampDiffMean	Source code
.twoSampDiffMedian	Source code
.variableMetrics	Source code
.zscore	Source code
annotating	Man page
annotating,ExpressionSet-method	Man page
annotating,MultiAssayExperiment-method	Man page
annotating,MultiDataSet-method	Man page
annotating,SummarizedExperiment-method	Man page
annotating_parameters	Man page Source code
clustering	Man page
clustering,ExpressionSet-method	Man page
clustering,MultiAssayExperiment-method	Man page
clustering,MultiDataSet-method	Man page
clustering,SummarizedExperiment-method	Man page
correcting	Man page
correcting,ExpressionSet-method	Man page
correcting,MultiAssayExperiment-method	Man page
correcting,MultiDataSet-method	Man page
correcting,SummarizedExperiment-method	Man page
filtering	Man page
filtering,ExpressionSet-method	Man page
filtering,MultiAssayExperiment-method	Man page
filtering,MultiDataSet-method	Man page
filtering,SummarizedExperiment-method	Man page
gg_barplot	Man page Source code
gg_boxplot	Man page Source code
gg_pie	Man page Source code
gg_volcanoplot	Man page Source code
hypotesting	Man page
hypotesting,ExpressionSet-method	Man page
hypotesting,MultiAssayExperiment-method	Man page
hypotesting,MultiDataSet-method	Man page
hypotesting,SummarizedExperiment-method	Man page
inspecting	Man page
inspecting,ExpressionSet-method	Man page
inspecting,MultiAssayExperiment-method	Man page
inspecting,MultiDataSet-method	Man page
inspecting,SummarizedExperiment-method	Man page
normalizing	Man page
normalizing,ExpressionSet-method	Man page
normalizing,MultiAssayExperiment-method	Man page
normalizing,MultiDataSet-method	Man page
normalizing,SummarizedExperiment-method	Man page
phenomis	Man page
phenomis-package	Man page
reading	Man page Source code
reducing	Man page
reducing,ExpressionSet-method	Man page
reducing,MultiAssayExperiment-method	Man page
reducing,MultiDataSet-method	Man page
reducing,SummarizedExperiment-method	Man page
search_code	Man page Source code
transforming	Man page
transforming,ExpressionSet-method	Man page
transforming,MultiAssayExperiment-method	Man page
transforming,MultiDataSet-method	Man page
transforming,SummarizedExperiment-method	Man page
vennplot	Man page Source code
writing	Man page
writing,ExpressionSet-method	Man page
writing,MultiAssayExperiment-method	Man page
writing,MultiDataSet-method	Man page
writing,SummarizedExperiment-method	Man page