Description Usage Arguments Value
Reads in Illumina expression data.
1 2 3 | read_Illumina(dataFile, qcFile, sampleSheet, expressionchipType,
ProbeID = "PROBE_ID", controlID = "ProbeID", method_norm = "none",
transform = "log2")
|
dataFile |
SampleProbeProfile. |
qcFile |
ControlProbeProfile. |
sampleSheet |
samplesheet. |
expressionchipType |
Expression chip name. |
ProbeID |
Column name of probe ID in SampleProbeProfile. |
controlID |
Column name of probe ID in ControlProbeProfile |
method_norm |
Normalisation method. See ?beadarray::readBeadSummaryData for details. |
transform |
Transformation method. See ?beadarray::readBeadSummaryData for details. |
Returns expression set object.
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