read_Illumina: read_Illumina (using beadarray).

In ShirinG/exprAnalysis: A package for analysing RNA-seq and expression array data

Description

Reads in Illumina expression data.

Usage

read_Illumina(dataFile, qcFile, sampleSheet, expressionchipType,
  ProbeID = "PROBE_ID", controlID = "ProbeID", method_norm = "none",
  transform = "log2")

Arguments

dataFile	SampleProbeProfile.
qcFile	ControlProbeProfile.
sampleSheet	samplesheet.
expressionchipType	Expression chip name.
ProbeID	Column name of probe ID in SampleProbeProfile.
controlID	Column name of probe ID in ControlProbeProfile
method_norm	Normalisation method. See ?beadarray::readBeadSummaryData for details.
transform	Transformation method. See ?beadarray::readBeadSummaryData for details.

Value

Returns expression set object.

ShirinG/exprAnalysis documentation built on May 9, 2019, 1:28 p.m.