Description Usage Arguments Value Examples
This calculates the differentially expressed genes among pairwise group comparisons (one comparison at a time).
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expmatrix |
An input matrix with gene names as row names and sample names as column names. |
method_dist |
the distance measure to be used. This must be one of "euclidean", "maximum", "manhattan", "canberra", "binary" or "minkowski". Any unambiguous substring can be given. Defaults to canberra. |
method_hclust |
the agglomeration method to be used. This should be (an unambiguous abbreviation of) one of "ward.D", "ward.D2", "single", "complete", "average" (= UPGMA), "mcquitty" (= WPGMA), "median" (= WPGMC) or "centroid" (= UPGMC). Defaults to ward.D2. |
samplecols |
Colors indicating samples' treatment group. |
main |
Main title for heatmap plot. Defaults to "Heatmap of genes". |
Returns a heatmap plot.
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