wgcna_heatmaps: wgcna_heatmaps (from WGCNA functions).

In ShirinG/exprAnalysis: A package for analysing RNA-seq and expression array data

Description

This function implements module-trait correlation heatmap plotting with wgcna.

Usage

wgcna_heatmaps(MEs, datExpr, datTraits, projectfolder = getwd())

Arguments

MEs	Module eigengenes.
datExpr	Tranposed input matrix with gene names as column names and sample names as row names.
datTraits	Phenotype data.
projectfolder	File path where to save the output to. Defaults to working directory. Here, it saves the output to a subfolder called "WGCNA".

Value

Writes Module_trait_correlations.txt and Module_CorPval.txt Plots module-trait correlation heatmap.

ShirinG/exprAnalysis documentation built on May 9, 2019, 1:28 p.m.