wgcna_modulememberships: wgcna_modulememberships (from WGCNA functions).

In ShirinG/exprAnalysis: A package for analysing RNA-seq and expression array data

Description

This function implements module membership analysis with wgcna.

Usage

wgcna_modulememberships(datExpr, datTraits, MEs, datKME, moduleColors,
  projectfolder = getwd())

Arguments

datExpr	Tranposed input matrix with gene names as column names and sample names as row names.
datTraits	Phenotype data.
MEs	Module eigengenes
datKME	Module membership.
moduleColors	Module colors.
projectfolder	File path where to save the output to. Defaults to working directory. Here, it saves the output to a subfolder called "WGCNA".

Value

Writes geneModuleMembership.txt and geneModuleMembershipPvalue.txt. Saves Intramodular analysis plots to pdf. Returns datKME.

ShirinG/exprAnalysis documentation built on May 9, 2019, 1:28 p.m.