annotationSummary-method: Summarize annotation

In SimonSchafferer/short-ncrna-annotation: Non-coding RNA annotation package

Description

Summarize annotation

Usage

## S4 method for signature 'EnsemblAnnotation'
annotationSummary(object,
  geneSubsetCols = c("gene_biotype", "gene_strand", "gene_type",
  "transcript_id", "exonIntron_number", "gene_name"),
  subsetAnnotStr = c("exon", "intron", "UTR"), ...)

## S4 method for signature 'GRangesBasedAnnotation'
annotationSummary(object, ...)

annotationSummary(object, ...)

## S4 method for signature 'RefSeqUCSCAnnotation'
annotationSummary(object, ...)

## S4 method for signature 'NcbiBlastAnnotation'
annotationSummary(object, ...)

Arguments

RangedAnnotation

class

Value

Annotation data.frames as list

SimonSchafferer/short-ncrna-annotation documentation built on May 9, 2019, 1:45 p.m.