hello | Hello, World! |
main | creates a ranked list from diff.Expression data |
seekCluster | k-means clustering for rows and hierarchical clustering for... |
seekCreateGeneSet | Create a gene set |
seekDE_cite | AnnotationDbi, org.Hs.eg.db, org.Mm.eg.db, biomaRt How to... |
seekDEcluster | PCA, heatmap and sample distance matrix |
seekDEma | creates a MA plot from diff.expr. data |
seekDEseq | differential expression, using the DESeq2 |
seekDEtransformations | Transformation variance graphs |
seekDEvolcano | creates a volcano plot from diff.expr. data |
seekGSEA | GSEA for GO terms |
seekGSEbubble | bubbleplot for GSEAs |
seekGSE_cite | How to cite |
seekGSEoverview | Overview bar graph for GO terms |
seekGSEplot | GSEA plot |
seekGSErl | creates a ranked list from diff.Expression data |
seekIRead | combines IRead output files into one file |
seekIRfind | combines IRFinder output files into one file |
seekKmeansClusterNumber | Cluster number for k-means clustering |
seekmagecksummary | plot MAGeCK count summary |
seekMappingInfo | RNA-Seq mapping summary |
seekPCA | PCA |
seekSalmon | calculates differential transcript expression, using the... |
seekSTRING | Get gene interactions |
seekSTRINGplots | Get gene interactions |
seekX2Y | Conversion between different genes IDs within the same... |
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