Man pages for Solatar/seeqR

helloHello, World!
maincreates a ranked list from diff.Expression data
seekClusterk-means clustering for rows and hierarchical clustering for...
seekCreateGeneSetCreate a gene set
seekDE_citeAnnotationDbi, org.Hs.eg.db, org.Mm.eg.db, biomaRt How to...
seekDEclusterPCA, heatmap and sample distance matrix
seekDEmacreates a MA plot from diff.expr. data
seekDEseqdifferential expression, using the DESeq2
seekDEtransformationsTransformation variance graphs
seekDEvolcanocreates a volcano plot from diff.expr. data
seekGSEAGSEA for GO terms
seekGSEbubblebubbleplot for GSEAs
seekGSE_citeHow to cite
seekGSEoverviewOverview bar graph for GO terms
seekGSEplotGSEA plot
seekGSErlcreates a ranked list from diff.Expression data
seekIReadcombines IRead output files into one file
seekIRfindcombines IRFinder output files into one file
seekKmeansClusterNumberCluster number for k-means clustering
seekmagecksummaryplot MAGeCK count summary
seekMappingInfoRNA-Seq mapping summary
seekPCAPCA
seekSalmoncalculates differential transcript expression, using the...
seekSTRINGGet gene interactions
seekSTRINGplotsGet gene interactions
seekX2YConversion between different genes IDs within the same...
Solatar/seeqR documentation built on Feb. 19, 2021, 8:07 p.m.