Man pages for Solatar/seeqR
| hello | Hello, World! |
| main | creates a ranked list from diff.Expression data |
| seekCluster | k-means clustering for rows and hierarchical clustering for... |
| seekCreateGeneSet | Create a gene set |
| seekDE_cite | AnnotationDbi, org.Hs.eg.db, org.Mm.eg.db, biomaRt How to... |
| seekDEcluster | PCA, heatmap and sample distance matrix |
| seekDEma | creates a MA plot from diff.expr. data |
| seekDEseq | differential expression, using the DESeq2 |
| seekDEtransformations | Transformation variance graphs |
| seekDEvolcano | creates a volcano plot from diff.expr. data |
| seekGSEA | GSEA for GO terms |
| seekGSEbubble | bubbleplot for GSEAs |
| seekGSE_cite | How to cite |
| seekGSEoverview | Overview bar graph for GO terms |
| seekGSEplot | GSEA plot |
| seekGSErl | creates a ranked list from diff.Expression data |
| seekIRead | combines IRead output files into one file |
| seekIRfind | combines IRFinder output files into one file |
| seekKmeansClusterNumber | Cluster number for k-means clustering |
| seekmagecksummary | plot MAGeCK count summary |
| seekMappingInfo | RNA-Seq mapping summary |
| seekPCA | PCA |
| seekSalmon | calculates differential transcript expression, using the... |
| seekSTRING | Get gene interactions |
| seekSTRINGplots | Get gene interactions |
| seekX2Y | Conversion between different genes IDs within the same... |
