seekGSEoverview: Overview bar graph for GO terms
In Solatar/seeqR:
Description
Usage
Arguments
Value
Examples
Description
Imports:
ggplot2
Usage
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seekGSEoverview(
tab,
Title = "",
n = 20,
fillColors = c("green", "yellow"),
pvalThreshold = 0.05,
orderby = "pval"
)
Arguments
tab
data.frame, direct output from seekGSEA
Title
plot totle
n
integer, number of GO terms to display
fillcolors
vector with 2 strings indicating colors, colors will be used for the p value color gradient
Value
ggplot2 object
Examples
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myDE <- sqDE
rl <- seekGSErl(myDE[[1]])
mygsea <- seekGSEA(rl, Species="mouse", setList="BP")
seekGSEoverview(mygsea)
Solatar/seeqR documentation built on Feb. 19, 2021, 8:07 p.m.
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Description Usage Arguments Value Examples
Description
Imports: ggplot2
Usage
1 2 3 4 5 6 7 8 | seekGSEoverview(
tab,
Title = "",
n = 20,
fillColors = c("green", "yellow"),
pvalThreshold = 0.05,
orderby = "pval"
)
|
Arguments
tab |
data.frame, direct output from seekGSEA |
Title |
plot totle |
n |
integer, number of GO terms to display |
fillcolors |
vector with 2 strings indicating colors, colors will be used for the p value color gradient |
Value
ggplot2 object
Examples
1 2 3 4 | myDE <- sqDE
rl <- seekGSErl(myDE[[1]])
mygsea <- seekGSEA(rl, Species="mouse", setList="BP")
seekGSEoverview(mygsea)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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