seekDEma: creates a MA plot from diff.expr. data
In Solatar/seeqR:

Description Usage Arguments Value Examples

Imports: DESeq2, apeglm

1	seekDEma(dds, compare = NA, alpha = 0.05)

`dds`	DESeq object as created as 3rd item with seekDeseq()
`compare`	string indicating which comparison should be used. Use this function with only dds, to see options.
`alpha`	p value cutoff used to indicate significance by color in the plot

a graph

myCounts <- sqCounts
myCondition <- c(0,0,0,2,2,2,2,3,3,3,3)
myBatch <- c(1,1,1,1,1,2,2,2,2,2,2)
myDE <- seekDeseq(myCounts, Conditions=myCondition, Batches=myBatch, Species="mouse", cond0=0, cond1=3)
dds <- myDE[[3]]
myNames <- seekMA(dds)
seekMA(dds, myNames[2])