seekDEtransformations: Transformation variance graphs
In Solatar/seeqR:
Description
Usage
Arguments
Value
Examples
Description
Imports:
DESeq2,
vsn
ggpubr
ggplot2
SummarizedExperiment
Usage
1
Arguments
dds
DESeq object: can be obtained as 3rd item from seekDEseq(), or from the normal DESeq2 pipeline
Value
ggarrange object with variance plots for 3 transformations
Examples
1
2
3
4
myCounts
myGroups
myDE <- seekDeseq(Counts = myCounts, Groups = myGroups)
seekTransformations(myDE[[3]])
Solatar/seeqR documentation built on Feb. 19, 2021, 8:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Imports: DESeq2, vsn ggpubr ggplot2 SummarizedExperiment
Usage
1 |
Arguments
dds |
DESeq object: can be obtained as 3rd item from seekDEseq(), or from the normal DESeq2 pipeline |
Value
ggarrange object with variance plots for 3 transformations
Examples
1 2 3 4 | myCounts
myGroups
myDE <- seekDeseq(Counts = myCounts, Groups = myGroups)
seekTransformations(myDE[[3]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.