seekX2Y: Conversion between different genes IDs within the same...

In Solatar/seeqR:

Description

#' Imports: AnnotationDbi, org.Hs.eg.db, org.Mm.eg.db,

Usage

seekX2Y(x, xtype, ytype, species)

Arguments

x	vector of characters, the gene IDs of the type 'xtype'
xtype	character, indicating the gene ID type of the input 'x', e.g. "ENTREZID", "SYMBOL", etc.
ytype	character, indicating the desired gene ID type for the output, e.g. "ENTREZID", "SYMBOL", etc.
species	character, specifying the species, must be either "human" or "mouse"

Details

calls mapIds from the AnnotationDbi package. Option multivals is set to "first"

Value

a vector of characters, the gene IDs of the output type 'ytype'

Examples

myGenes <- c("KRT83","CD80","SLC14A1")
seekX2Y(myGenes, "SYMBOL", "ENTREZID", "human")

Solatar/seeqR documentation built on Feb. 19, 2021, 8:07 p.m.