StoXProject/RstoxBase
Base StoX Functions

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263
Source code
22
Man pages
150
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StoXProject/RstoxBase: Base StoX Functions
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API

API for StoXProject/RstoxBase
Base StoX Functions

Global functions
.onLoad Source code
AcousticDensity Man page Source code
AcousticLayer Man page
AcousticPSU Man page
AcousticTargetStrength Man page
AddHaulDensityToSuperIndividuals Man page
AddPSUToPreySpeciesCategoryCatch Man page Source code
AppendNASC Man page
AssignmentLengthDistribution Man page
AssignmentLengthDistributionData Man page
BioticAssignment Man page
BioticAssignmentWeighting Man page Source code
BioticLayer Man page
BioticPSU Man page
Channel Man page
DataTypes Man page
DefineAcousticLayer Man page Source code
DefineAcousticPSU Man page Source code
DefineAcousticTargetStrength Man page
DefineBioticAssignment Man page Source code
DefineBioticAssignment_Warnings Source code
DefineBioticLayer Man page Source code
DefineBioticPSU Man page Source code
DefineLayer Man page Source code
DefineModel Man page
DefinePSU Man page Source code
DefineRegression Man page
DefineStratumPolygon Man page Source code
DefineSurvey Man page
DensityData Man page
DistributeNASC Source code
EDSU Man page
EstimateBioticRegression Man page
FUN Source code
GearDependentCatchCompensation Man page
GearDependentLengthDistributionCompensation Man page
GearDependentSpeciesCategoryCatchCompensation Man page Source code
Haul Man page
ImputeDataByRandomSampling_StoX3 Source code
ImputeSuperIndividuals Man page
ImputeSuperIndividuals_StoX3 Man page Source code
Individuals Man page Source code
IndividualsData Man page
Layer Man page
LengthDependentLengthDistributionCompensation Man page
LengthDistribution Man page Source code
LengthDistributionData Man page
MeanDensity Man page
MeanDensityData Man page
MeanLengthDistribution Man page
MeanLengthDistributionData Man page
MeanNASC Man page
MeanNASCData Man page
MeanSpeciesCategoryCatch Man page Source code
MeanSpeciesCategoryCatchData Man page
ModelData Man page
NASC Man page Source code
NASCData Man page
NASCToDensity Source code
NASCToStoxAcoustic Man page
PSU Man page
PlotAcousticTrawlSurvey Man page Source code
PlotAcousticTrawlSurveyData Man page
PreySpeciesCategoryCatch Man page Source code
PreySpeciesCategoryCatchData Man page
ProcessData Man page
Quantity Man page Source code
QuantityData Man page
Regression Man page
RegroupLengthData Source code
RegroupLengthDistribution Man page Source code
RelativeLengthDistribution Man page
ReportDensity Man page Source code
ReportDensityData Man page
ReportFunctions Man page
ReportPreySpeciesCategoryCatch Man page Source code
ReportPreySpeciesCategoryCatchData Man page
ReportQuantity Man page Source code
ReportQuantityData Man page
ReportSpeciesCategoryCatch Man page Source code
ReportSpeciesCategoryCatchData Man page
ReportSuperIndividuals Man page Source code
ReportSuperIndividualsData Man page
Resolution Man page
RstoxBase Man page
RstoxBase-package Man page
SpeciesCategoryCatch Man page Source code
SpeciesCategoryCatchData Man page
SplitMeanNASC Man page
SplitNASC Man page
Station Man page
StoX_multipolygon_WKT Man page
StoxDataStartMiddleStopDateTime Man page
Stratum Man page
StratumArea Man page Source code
StratumAreaData Man page
StratumArea_supportingIterativeCentroidCalculation Source code
StratumPolygon Man page
SumLengthDistribution Man page
SumLengthDistributionData Man page
SumNASC Man page
SumNASCData Man page
SumSpeciesCategoryCatch Man page Source code
SumSpeciesCategoryCatchData Man page
SuperIndividuals Man page
SuperIndividualsData Man page
Survey Man page
SweptAreaDensity Man page
WriteStratumPolygon Man page Source code
WriteStratumPolygonData Man page
addLayerToBioticAssignmentAndFormat Source code
addStratumNames Man page Source code
aggregateBaselineDataOneTable Man page Source code
aggregateBaselineDataOneTableSingleFunction Man page Source code
allEqual Man page
allargs Man page
atMaxLatitude Source code
atMaxLongitude Source code
atMinLatitude Source code
atMinLongitude Source code
backwardCompatibility_RstoxBase Man page
checkIntersect Source code
combined.color Man page
createLayerTable Source code
cv Man page
deg2rad Source code
factorNAfirst Man page
filterTable Man page Source code
formatOutput Man page Source code
formatOutputOneTable Source code
formatProcessData Man page
fractionOfOccurrence Man page
fractionOfSum Man page
general_arguments Man page
general_arguments2.7 Man page
general_map_plot_arguments Man page
general_plot_arguments Man page
general_report_arguments Man page
getAllAggregationVariables Source code
getAllResolutionVariables Source code
getBadRaisingFactorError Source code
getBaseUnit Man page
getCommonIntervals Man page Source code
getDataTypeDefinition Man page Source code
getDefaultLayerNames Source code
getEDSUToHaulDistance Source code
getFunctionArgumentHierarchyForSpcificationParameters Man page Source code
getImputeRowIndicesOneGroup_StoX3 Source code
getImputeRowIndicesOneLevel_StoX3 Source code
getIndividualNames Source code
getLengthInterval Source code
getPSUByTime Source code
getPSUName Source code
getPSUProcessDataFromPSUByTime Source code
getPSUStartStopDateTime Source code
getPSUStartStopDateTimeByPSU Source code
getPSUStartStopDateTimeOneCruise Source code
getProjectXMLFilePath Man page
getReportFunctionAlias Source code
getReportFunctionElementByFunctionName Source code
getReportFunctionOutputNames Source code
getReportFunctionVariableName Man page Source code
getReportFunctions Man page Source code
getResolutionVariables Source code
getResourceFileExt Source code
getRstoxBaseDefinitions Man page Source code
getSeedVector Man page
getSpecificationFunctionsByUse Source code
getSpecificationParameterDisplayNameByUse Source code
getSquaredRelativeDiff Source code
getSquaredRelativeDistance Source code
getSquaredRelativeTimeDiff Source code
getStratumNames Man page Source code
getStratumOfSSUs_SF Source code
getTargetStrengthByLengthFunction Source code
hasBaseUnit Man page
hasSpecificationParameter Source code
hasWeightingParameter Source code
hasX Source code
initiateRstoxBase Source code
isCategorical Source code
mean Source code
modifyParameter_ProjectXMLList Man page
modifyProj4String Man page
notAllStationsInStratum_Warning Source code
number Man page
polygonAreaPolygonDT Source code
polygonAreaPolygonXY Source code
polygonAreaSimpleOnePolygon Source code
polygonArea_simple Source code
processPropertyFormats Man page
readAcousticPSUFrom2.7 Man page
readBioticAssignmentFrom2.7 Man page
readBioticPSUFrom2.7 Man page
readOneProcessDataByFunctionNameFromProjectJSON Source code
readProjectXMLToList Man page
readStoxMultipolygonWKTFromFile Source code
readStratumPolygonFrom2.7 Man page
readStratumPolygonFromFile Source code
removeEmptyPSUs Source code
removePSUsWithMissingStratum Source code
renameSSULabelInPSUProcessData Man page Source code
renameSSUToSSULabelInTable Source code
replaceMissingData_StoX3 Source code
replaceNAByReference Man page
sampleSorted Man page
setBaseUnit Man page
setDefaultsInStoxFunction Man page
setPlotAttributes Man page
setUnitRstoxBase Man page
simplifyStratumPolygon Source code
stoxFunctionAttributes Man page
summaryStox Man page
test_lwgeom Source code
test_maps Source code
toJSON_Rstox Man page
turn_off_s2 Source code
turn_off_s2_keep_msg Source code
writeProjectXMLToList Man page
writeStratumPolygonFrom2.7 Man page
StoXProject/RstoxBase documentation built on Nov. 6, 2024, noon

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