Files in SysBioChalmers/DSAVE-R
DSAVE: Tools to Investigate Variation and Purity of Subpopulations in Single-Cell RNA-Seq Data
.Rbuildignore
.github/workflows/main.yml
.gitignore
DESCRIPTION
DSAVE.Rproj
LICENSE.md
NAMESPACE
R/DSAVE.R
R/DSAVEAlignDataset.R
R/DSAVECalcBTMScore.R
R/DSAVEDivParamPlot.R
R/DSAVEDivUMIPlot.R
R/DSAVEGenerateSNODataset.R
R/DSAVEGenerateTemplate.R
R/DSAVEGetGeneVariation.R
R/DSAVEGetSingleCellDivergence.R
R/DSAVEGetStandardTemplate.R
R/DSAVEGetTotalVariationFromBulk.R
R/DSAVEGetTotalVariationPoolSize.R
R/DSAVEPlotDSAVEScore.R
R/DSAVEPlotDivergence.R
R/DSAVEPlotTotalVariation.R
R/GetLogFactorials.R
R/LogBinomialPDF.R
R/UMIDistr2000.R
R/averageIntoBins.R
R/binInf2000.R
R/bulkTotalVar1vs1.R
R/bulkTotalVar4vs4.R
R/createPackageVariables.R
R/datasetScoresHuman.R
R/downloadData.R
R/extractSeuratData.R
R/genSampDs.R
R/generateBinningInfo.R
R/generateUMIdistribution.R
R/genesForTemplate.R
R/getGeneCVs.R
R/getVarAndLogCV.R
R/tpmDSAVE.R
README.md
data/UMIDistr1000.rda
data/UMIDistr2000.rda
data/UMIDistr500.rda
data/binInf1000.rda
data/binInf2000.rda
data/binInf500.rda
data/bulkTotalVar1vs1.rda
data/bulkTotalVar4vs4.rda
data/ctPbmc68k.rda
data/datasetScoresHuman.rda
data/datasetScoresHuman1000.rda
data/datasetScoresHuman500.rda
data/genesForTemplate.rda
docs/index.html
inst/doc/docs.html
man/DSAVE.Rd
man/DSAVEAlignDataset.Rd
man/DSAVECalcBTMScore.Rd
man/DSAVEDivParamPlot.Rd
man/DSAVEDivUMIPlot.Rd
man/DSAVEGenerateSNODataset.Rd
man/DSAVEGenerateTemplate.Rd
man/DSAVEGetGeneVariation.Rd
man/DSAVEGetSingleCellDivergence.Rd
man/DSAVEGetStandardTemplate.Rd
man/DSAVEGetStandardTemplate1000.Rd
man/DSAVEGetStandardTemplate500.Rd
man/DSAVEGetTotalVariationFromBulk.Rd
man/DSAVEGetTotalVariationPoolSize.Rd
man/DSAVEPlotDSAVEScore.Rd
man/DSAVEPlotDivergence.Rd
man/DSAVEPlotTotalVariation.Rd
man/GetLogFactorials.Rd
man/LogBinomialPDF.Rd
man/UMIDistr2000.Rd
man/averageIntoBins.Rd
man/binInf2000.Rd
man/bulkTotalVar1vs1.Rd
man/bulkTotalVar4vs4.Rd
man/createPackageVariables.Rd
man/datasetScoresHuman.Rd
man/downloadData.Rd
man/extractSeuratData.Rd
man/genSampDs.Rd
man/generateBinningInfo.Rd
man/generateUMIDistribution.Rd
man/genesForTemplate.Rd
man/getGeneCVs.Rd
man/getVarAndLogCV.Rd
man/tpmDSAVE.Rd
tests/RunAllTests.R
tests/testthat/test_TR001_totvarbulk.R
tests/testthat/test_TR002_totvarsc.R
tests/testthat/test_TR003_tpmDSAVE.R
tests/testthat/test_TR004_DSAVEGetGeneVariation.R
tests/testthat/test_TR005_DSAVEAlignDataset.R
tests/testthat/test_TR006_DSAVEGenerateSNODataset.R
tests/testthat/test_TR007_DSAVECalcBTMScore.R
tests/testthat/test_TR008_DSAVEGetSingleCellDivergence.R
vignettes/docs.Rmd
