DSAVEPlotDSAVEScore: DSAVEPlotDSAVEScore

In SysBioChalmers/DSAVE-R: DSAVE: Tools to Investigate Variation and Purity of Subpopulations in Single-Cell RNA-Seq Data

Description

Plots DSAVE scores, optionally with scores from other datasets as reference.

Usage

DSAVEPlotDSAVEScore(dsScores, dsNames, ref = NA)

Arguments

dsScores	Output from DSAVEGetTotalVariation or a list of such outputs
dsNames	The names of the dataset(s), either a string or a list of strings
ref	(Optional) Reference datasets, for example DSAVE::datasetScoresHuman (2000), DSAVE::datasetScoresHuman1000 and DSAVE::datasetScoresHuman500. The reference must have been calculated using the same template as the samples, i.e. match the number of cells.

Details

Calculates the average pairwise total variation between two pools of cells with specific size, with a TPM filtration on the genes.

Value

nothing

Author(s)

Johan Gustafsson, <[e-mail]>

Examples

## Not run: DSAVEPlotDSAVEScore(dsScores, dsNames, DSAVE::datasetScoresHuman)

SysBioChalmers/DSAVE-R documentation built on Oct. 19, 2021, 11:37 p.m.