bulkTotalVar1vs1: bulkTotalVar1vs1
In SysBioChalmers/DSAVE-R: DSAVE: Tools to Investigate Variation and Purity of Subpopulations in Single-Cell RNA-Seq Data
Description
Usage
Format
Source
Description
Average total variation between two bulk samples at different expression intervals (reasonably comparable
to TPM).
Usage
1
Format
list of lists, where the inner list contains the expression interval and the variation.
Source
We downloaded 8 bulk RNA-Seq samples (FPKM) from the BLUEPRINT Epigenome Project31.
The samples were taken from the project EGAD00001001173 and have the following sample IDs:
S002EV11, S004M711, S007DD11, S007G711, S008H111, S009W411, S0018A13, and S0041C11.
The FPKM data were normalized using TMM32 before use, and scaled to an average count of 10^6 per sample.
SysBioChalmers/DSAVE-R documentation built on Oct. 19, 2021, 11:37 p.m.
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Description Usage Format Source
Description
Average total variation between two bulk samples at different expression intervals (reasonably comparable to TPM).
Usage
1 |
Format
list of lists, where the inner list contains the expression interval and the variation.
Source
We downloaded 8 bulk RNA-Seq samples (FPKM) from the BLUEPRINT Epigenome Project31. The samples were taken from the project EGAD00001001173 and have the following sample IDs: S002EV11, S004M711, S007DD11, S007G711, S008H111, S009W411, S0018A13, and S0041C11. The FPKM data were normalized using TMM32 before use, and scaled to an average count of 10^6 per sample.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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