Files in TalhoukLab/biostatUtil

Utility Functions Used in Biostatistics Projects

R/PCAplot.R R/SummaryStatsBy.R R/addTableNumber.R R/assessSurvTime.R R/best_cut.R R/binaryCM.R R/binaryCMAsHTML.R R/biostatUtil.R R/bootMean.R R/build_cuts.R R/data.R R/date_compute.R R/date_extremes.R R/date_format.R R/design_matrix.R R/doCohortCharacteristics.R R/doCoxphGeneric.R R/doCoxphMultivariable.R R/doInteractionCox.R R/doKMPlots.R R/exploreData.R R/extract.R R/findCutpointByCoxph.R R/freqTable.R R/geoMean.R R/gg_diagnostic_prev.R R/ggkm.R R/grhoTests.R R/indepTests.R R/kappaBootCI.R R/knit_with_date.R R/lifetable.R R/logistfPrint.R R/medianCtr.R R/ms_condition.R R/ms_plot.R R/ms_process.R R/ms_summarize.R R/ms_top.R R/multiClassCM.R R/multiplot.R R/name_cuts.R R/pairwiseCor.R R/parse_rd.R R/percents.R R/percents_html.R R/plotKM.R R/plotKMDetail.R R/plotSchoenfeld.R R/plot_annotated.R R/plot_do.R R/prettyCoxph.R R/remove_dup.R R/round_small.R R/sample_size.R R/sample_size_prop.R R/sdFromCI.R R/statsWithMissing.R R/summaryAsHTML.R R/tableAsHTML.R R/utils.R R/utils_coxph.R R/utils_string.R R/wrap_ggkm.R README.Rmd README.md man/PCAplot.Rd man/R2_to_D.Rd man/SummaryStatsBy.Rd man/Xunivcoxph.Rd man/addTableNumber.Rd man/assessSurvTime.Rd man/barplotSum.Rd man/best_cut.Rd man/binaryCM.Rd man/binaryCMAsHTML.Rd man/biostatUtil.Rd man/bootMean.Rd man/boxplotSum.Rd man/build_cuts.Rd man/censor_date.Rd man/chr_to_date.Rd man/cleanDate.Rd man/coxphOut.Rd man/date_compute.Rd man/date_extremes.Rd man/design_matrix.Rd man/diff_years.Rd man/doBarplot.Rd man/doBoxplotAmongSubtypes.Rd man/doCohortCharacteristics.Rd man/doCoxph.Rd man/doHist.Rd man/doInteractionCox.Rd man/doJitterplotAmongSubtypes.Rd man/doKMPlots.Rd man/escapeForGrep.Rd man/exploreData.Rd man/extract_results.Rd man/findCutpointByCoxph.Rd man/formatDate.Rd man/formatNA.Rd man/freqTable.Rd man/g_legend.Rd man/geoMean.Rd man/getFormat.Rd man/getPval.Rd man/gg_diagnostic_prev.Rd man/ggkm.Rd man/grhoTests.Rd man/histSum.Rd man/indepTests.Rd man/indexOf.Rd man/isFirstLetterUpperCase.Rd man/kappaBootCI.Rd man/knit_with_date.Rd man/lifetable.Rd man/logistfPrint.Rd man/medianCtr.Rd man/ms_condition.Rd man/ms_plot.Rd man/ms_process.Rd man/ms_summarize.Rd man/ms_top.Rd man/multiClassCM.Rd man/multiplot.Rd man/name_cuts.Rd man/numericToDate.Rd man/pairwiseCor.Rd man/parse_rd.Rd man/percents.Rd man/plotKM.Rd man/plotKMDetail.Rd man/plotSchoenfeld.Rd man/prettyCoxph.Rd man/pro.Rd man/psm.Rd man/remove_dup.Rd man/round_small.Rd man/sample_size_prop.Rd man/sdFromCI.Rd man/sem.Rd man/simpleCap.Rd man/ssize_D.Rd man/statsWithMissing.Rd man/summaryAsHTML.Rd man/tableAsHTML.Rd man/wrap_ggkm.Rd tests/testthat.R tests/testthat/test-PCAplot.R tests/testthat/test-SummaryStatsBy.R tests/testthat/test-assessSurvTime.R tests/testthat/test-best_cut.R tests/testthat/test-binaryCM.R tests/testthat/test-binaryCMAsHTML.R tests/testthat/test-bootMean.R tests/testthat/test-build_cuts.R tests/testthat/test-date_compute.R tests/testthat/test-date_extremes.R tests/testthat/test-date_format.R tests/testthat/test-design_matrix.R tests/testthat/test-doCohortCharacteristics.R tests/testthat/test-doCoxph.R tests/testthat/test-exploreData.R tests/testthat/test-extract.R tests/testthat/test-findCutpointByCoxph.R tests/testthat/test-freqTable.R tests/testthat/test-geoMean.R tests/testthat/test-gg_diagnostic_prev.R tests/testthat/test-grhoTests.R tests/testthat/test-indepTests.R tests/testthat/test-kappaBootCI.R tests/testthat/test-lifetable.R tests/testthat/test-logistfPrint.R tests/testthat/test-mass_spec.R tests/testthat/test-medianCtr.R tests/testthat/test-multiClassCM.R tests/testthat/test-name_cuts.R tests/testthat/test-pairwiseCor.R tests/testthat/test-parse_rd.R tests/testthat/test-percents.R tests/testthat/test-percents_html.R tests/testthat/test-plotKM.R tests/testthat/test-plotSchoenfeld.R tests/testthat/test-plot_do.R tests/testthat/test-prettyCoxph.R tests/testthat/test-round_small.R tests/testthat/test-sdFromCI.R tests/testthat/test-ssize_D.R tests/testthat/test-statsWithMissing.R tests/testthat/test-summaryAsHTML.R tests/testthat/test-tableAsHTML.R tests/testthat/test-utils.R tests/testthat/test-utils_coxph.R tests/testthat/test-utils_string.R