heatmap_motif_clustering: Plot the result of hierarchical clustering of motifs

In TedCCLeung/PhotoperiodMotif: What the Package Does (One Line, Title Case)

Plot the result of hierarchical clustering of motifs

Description

Plot the result of hierarchical clustering of motifs

Usage

heatmap_motif_clustering(
  input_matrix,
  hclust_out,
  cutree_out,
  motifset,
  colors = c("purple", "white", "orange"),
  color_range = c(-2, 0, 2),
  scale_name = " ",
  panel_size = grid::unit(0.75, "cm"),
  panel_gap = grid::unit(0.9, "cm"),
  panel_width = grid::unit(4, "cm"),
  panel_link_width = grid::unit(0.6, "cm")
)

Arguments

input_matrix	Numerical matrix with motif names as row names and sample names as column names.
hclust_out	result from hclust() of the motifs
cutree_out	result from cutree()
motifset	Universalmotif object
colors	Character vector of colors for the gradient.
color_range	Numerical vector that represents the values the number correspond to. Must be of the same length as colors.
scale_name	Title of the gradient scale legend.
panel_size	Size of the panel in ggplot::grid::unit().
panel_gap	Gap of the panel in ggplot::grid::unit().
panel_width	Width of the panel in ggplot::grid::unit().
panel_link_width	Link width of the panel in ggplot::grid::unit().

Value

ComplexHeatmap object

TedCCLeung/PhotoperiodMotif documentation built on April 27, 2022, 9:01 p.m.