run_mapping: Function to perform motif mapping
In TedCCLeung/PhotoperiodMotif: What the Package Does (One Line, Title Case)
run_mapping R Documentation
Function to perform motif mapping
Description
Function to perform motif mapping
Usage
run_mapping(dir, FASTA_files, motif_MEME_file, mapping_pval_threshold = 1e-04)
Arguments
dir
Character. Output directory.
FASTA_files
Character vector of full paths to FASTA .fa files.
motif_MEME_file
Character. Full path to a motif .meme file.
mapping_pval_threshold
Numerical. Default 1e-4. Threshold to determine whether a motif has been mapped to a stretch of sequence.
Value
None.
TedCCLeung/PhotoperiodMotif documentation built on April 27, 2022, 9:01 p.m.
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| run_mapping | R Documentation |
Function to perform motif mapping
Description
Function to perform motif mapping
Usage
run_mapping(dir, FASTA_files, motif_MEME_file, mapping_pval_threshold = 1e-04)
Arguments
dir |
Character. Output directory. |
FASTA_files |
Character vector of full paths to FASTA .fa files. |
motif_MEME_file |
Character. Full path to a motif .meme file. |
mapping_pval_threshold |
Numerical. Default 1e-4. Threshold to determine whether a motif has been mapped to a stretch of sequence. |
Value
None.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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