View source: R/positional_bias_subfunc.R
positional_bias_subfunc | R Documentation |
Analyse positional bias of motifs in a set of DNA sequences
positional_bias_subfunc( motifs, list_of_seqs, seq_names = NULL, motif_name = "NA", p_value = 1e-06, reverse_complement = TRUE, bandwidth = NULL )
motifs |
Universalmotif object or name of a .meme file with motifs |
list_of_seqs |
List of Biostrings objects or list of file names of .fa file for DNA sequences |
seq_names |
Names of the individual items in the list_of_seqs |
motif_name |
Character. Name of the motif |
p_value |
Numerical. p-value for calling a motif peak |
reverse_complement |
Logical. Whether the reverse complement is used to look for motifs |
bandwidth |
Bandwidth of the universalmotif package |
Data frame
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.