run_heatmap: Function to plot motif enrichment results as heat maps

View source: R/run_heatmap.R

run_heatmapR Documentation

Function to plot motif enrichment results as heat maps

Description

Function to plot motif enrichment results as heat maps

Usage

run_heatmap(
  dir,
  enrichment_dir,
  motif_MEME_file,
  enrich_pval_threshold = 0.01,
  cutree_height = 0.5
)

Arguments

dir

Character. Output directory.

enrichment_dir

Character. Full path to the run_enrich output directory.

motif_MEME_file

Character. Full path to a motif .meme file.

enrich_pval_threshold

Numerical. Default 1e-2. P value threshold to decide for an enriched motif.

cutree_height

Numerical. Similarity value to cut the dendrogram for merging motifs.

Value

None.


TedCCLeung/PhotoperiodMotif documentation built on April 27, 2022, 9:01 p.m.