run_heatmap: Function to plot motif enrichment results as heat maps

In TedCCLeung/PhotoperiodMotif: What the Package Does (One Line, Title Case)

Function to plot motif enrichment results as heat maps

Description

Function to plot motif enrichment results as heat maps

Usage

run_heatmap(
  dir,
  enrichment_dir,
  motif_MEME_file,
  enrich_pval_threshold = 0.01,
  cutree_height = 0.5
)

Arguments

dir	Character. Output directory.
enrichment_dir	Character. Full path to the run_enrich output directory.
motif_MEME_file	Character. Full path to a motif .meme file.
enrich_pval_threshold	Numerical. Default 1e-2. P value threshold to decide for an enriched motif.
cutree_height	Numerical. Similarity value to cut the dendrogram for merging motifs.

Value

None.

TedCCLeung/PhotoperiodMotif documentation built on April 27, 2022, 9:01 p.m.