run_heatmap | R Documentation |
Function to plot motif enrichment results as heat maps
run_heatmap( dir, enrichment_dir, motif_MEME_file, enrich_pval_threshold = 0.01, cutree_height = 0.5 )
dir |
Character. Output directory. |
enrichment_dir |
Character. Full path to the run_enrich output directory. |
motif_MEME_file |
Character. Full path to a motif .meme file. |
enrich_pval_threshold |
Numerical. Default 1e-2. P value threshold to decide for an enriched motif. |
cutree_height |
Numerical. Similarity value to cut the dendrogram for merging motifs. |
None.
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