cellranger_vdj_filter: Filter Cell Ranger VDJ

In Terkild/scvdj:

Filter Cell Ranger VDJ

Description

Filter by boolean columns

Usage

cellranger_vdj_filter(
  contig_annotations,
  filterTrue = c("full_length", "high_confidence"),
  min.umis = 0
)

Arguments

contig_annotations	Dataframe containing contig_annotations
filterTrue	Vector of which "Boolean columns" in cellranger contig_annotation should be true ("full_length", "high_confidence", "productive")
min.umis	Integer threshold for minimum UMI count required to be kept

Value

data.frame containing contig annotations

Terkild/scvdj documentation built on Oct. 22, 2023, 11:12 p.m.