clonotype_top: Filter top clonotypes by rank

In Terkild/scvdj:

Filter top clonotypes by rank

Description

Filter top clonotypes by rank

Usage

clonotype_top(
  clonotypes,
  clonotypes_max = 10,
  cells_min = 1,
  nonclonal_name = "Polyclonal",
  ...
)

Arguments

clonotypes	Vector of clonotype assignment to each cell
clonotypes_max	Max number of clonotypes to return
cells_min	Integer of number of cells required to be considered a clone
...	Passed on to clonotype_filter

Value

Returns a vector of same length as input clonotypes with filtered clonotype assignments

Terkild/scvdj documentation built on Oct. 22, 2023, 11:12 p.m.