cellranger_vdj_load: Load Cell Ranger VDJ

In Terkild/scvdj:

Load Cell Ranger VDJ

Description

Load Cell Ranger VDJ

Usage

cellranger_vdj_load(
  path,
  consensus = TRUE,
  annotation_file = "outs/filtered_contig_annotations.csv",
  consensus_file = "outs/consensus_annotations.csv",
  ...
)

Arguments

path	Path to Cell Ranger output (root folder, not "outs" folder)
consensus	Boolean if contigs assigned to consensus sequences should use the consensus annotation
annotation_file	contig_annotation file to use ("all" versus "filtered")
consensus_file	consensus_annotation file to use
...	Passes variables on to consensus_merge

Value

data.frame containing contig annotations

Terkild/scvdj documentation built on Oct. 22, 2023, 11:12 p.m.