consensus_merge: Merge consensus VDJ annotation into contigs

In Terkild/scvdj:

Merge consensus VDJ annotation into contigs

Description

Merges consensus VDJ annotations into contig annotation data.frame to allow incomplete to be called as most likely clonotype

Usage

consensus_merge(
  data_annotation,
  data_consensus,
  mutual_columns = c("length", "reads", "umis"),
  consensus_suffix = ".consensus"
)

Arguments

data_annotation	Contig annotations from Cell Ranger output
data_consensus	Consensus contigs from Cell Ranger output
mutual_columns	Columns that are included from both outputs (set by mutual_columns)
consensus_suffix	Suffix given to mutual_columns from the consensus data

Value

data.frame containing contig annotations

Terkild/scvdj documentation built on Oct. 22, 2023, 11:12 p.m.