plot_vdj_circos: Circos plot of V and J segments
In Terkild/scvdj:

plot_vdj_circos

R Documentation

Circos plot of V and J segments

Description

Circos plot of V and J segments

Usage

plot_vdj_circos(
  Vsegment,
  Jsegment,
  Dsegment = c(),
  clone = c(),
  polyclonal_label = "Polyclonal",
  polyclonal_color = "#00000020",
  start_degree = 270,
  clone_opacity = 80,
  clone_colors,
  link_lwd = 0.25,
  label_threshold = 2
)

Arguments

`Vsegment`	Vector of V segment assignment
`Jsegment`	Vector of J segment assignment
`Dsegment`	Vector of D segment assignment
`clone`	Vector of clone assignment
`polyclonal_label`	What label is used to tag polyclonal (within clone vector)
`polyclonal_color`	Color for polyclonal connections
`start_degree`	Where on the circle should the first segment start
`clone_opacity`	Opacity of clonal connections
`clone_colors`	Named vector of colors (names corresponds to values in clone vector)
`link_lwd`	Line width of connections