Creates a matrix of contrasts between the individuals not in the training population (i.e. the candidates) and the mean of the whole population.
The index of the unphenotyped entries in the relationship matrix (A)
The size of the whole population
Rincent, R., Laloe, D., Nicolas, S., Altmann, T., Brunel, D., Revilla, P., Moreau, L. (2012). Maximizing the Reliability of Genomic Selection by Optimizing the Calibration Set of Reference Individuals: Comparison of Methods in Two Diverse Groups of Maize Inbreds (Zea mays L.). Genetics, 192(2), 715–728. http://doi.org/10.1534/genetics.112.141473
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